ExPecto

tissue-specific gene expression effect predictions for human mutations

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Model:

Beluga (2019 DNA model)

Genome assembly:

GRCh37/hg19

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ExPecto leverages deep learning-based sequence models trained on chromatin profiling data, and integrated with spatial transformation and regularized linear models. This framework does not use any variant information, enabling prediction of the expression effect for any variant, even those that are rare or have never been previously observed.

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Flatiron Institute - Simons Foundation | How to Cite

ExPecto

Submit a ExPecto analysis

VCF (Variant effect prediction)