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Analyses
Networks
: tissue-specific gene networks (GIANT)
Modules
: functional module detection (large gene lists)
Sei
: chromatin effects of variants
In silico mutagenesis
: discover regulatory features of sequences
ExPecto SC
: cell-type-specific gene expression effects for mutations
ExPecto
: tissue-specific gene expression effects of variants
GWAS
: GWAS reprioritization (NetWAS)
ASD Browser
: predicted effects of ASD proband mutations
Resources
Data sources
Network downloads
HumanBase API
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Case studies
Documentation
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HumanBase Data Sources
Term definitions
Ontology definitions
Name
Version
Gene annotations
Gene-term associations used in enrichment analyses, term predictions, etc.
Name
Version
GIANT data compendia
Genomics datasets used in the network integrative analyses
Name
Dataset Count
Download
Human Compendium (GIANT v1, 2015)
990
human_compendium.tsv
Flatiron Institute
-
Simons Foundation