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Analyses
Networks
: tissue-specific gene networks (GIANT)
Modules
: functional module detection (large gene lists)
Sei
: extended regulatory and chromatin effects of variants (2021)
Beluga
: chromatin effects of variants (2019)
Seqweaver
: post-transcriptional variant effects
In silico mutagenesis
: discover regulatory features of sequences
ExPecto
: tissue-specific gene expression effects of variants
ExPecto SC
: cell-type-specific gene expression effects for mutations
GWAS
: GWAS reprioritization (NetWAS)
ASD Browser
: predicted effects of ASD proband mutations
Resources
Data sources
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HumanBase API
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Tissue gene network
Tissue expression
Biological process gene network
Biological process
Disease
Tissue-specific interactions
Functional networks that capture tissue-specific interactions from large data compendia
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Tissue expression
Experimentally validated and computationally predicted tissue/cell-type expression
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Biological process-specific interactions
Functional networks that capture interactions specific to biological processes and pathways
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Biological process associations
Experimentally associated and computationally predicted associations
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IDENTIFIER
Disease associations
Experimentally associated and computationally predicted associations
NAME
IDENTIFIER
Flatiron Institute
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Simons Foundation